If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ), 'gf_id' => 'HOM05D000695', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000695' ), 'data_identifier' => 'HOM05D000695', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000695', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '819', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p16510' => 'bna', 'A07p15650' => 'bna', 'A07p15760' => 'bna', 'A07p41760' => 'bna', 'A08p25020' => 'bna', 'A08p25040' => 'bna', 'A08p25050' => 'bna', 'A08p25060' => 'bna', 'A09p36850' => 'bna', 'A09p36860' => 'bna', 'A09p36900' => 'bna', 'Aa31LG6G11640' => 'aar', 'Aa31LG6G6120' => 'aar', 'Aa31LG6G6140' => 'aar', 'Aa31LG6G6450' => 'aar', 'Aa31LG6G6470' => 'aar', 'Aa31LG7G4780' => 'aar', 'Actinidia18016' => 'ach', 'Actinidia18017' => 'ach', 'Actinidia20550' => 'ach', 'AL1G33400' => 'aly', 'AL1G43230' => 'aly', 'AL1G43240' => 'aly', 'AL1G43250' => 'aly', 'AL1G43260' => 'aly', 'AL1G43270' => 'aly', 'AL1G43320' => 'aly', 'AL1G43350' => 'aly', 'AL1G58590' => 'aly', 'AL2G36260' => 'aly', 'Aqoxy6G01782' => 'aox', 'Aqoxy6G01825' => 'aox', 'Aqoxy6G01826' => 'aox', 'Aqoxy6G01828' => 'aox', 'Aqoxy6G01831' => 'aox', 'Aqoxy6G01832' => 'aox', 'Aqoxy6G01834' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G9B1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL1RZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF6EG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAA9BU' => 'arhy', 'AT1G20470' => 'ath', 'AT1G29420' => 'ath', 'AT1G29430' => 'ath', 'AT1G29440' => 'ath', 'AT1G29450' => 'ath', 'AT1G29460' => 'ath', 'AT1G29490' => 'ath', 'AT1G29500' => 'ath', 'AT1G29510' => 'ath', 'AT1G76190' => 'ath', 'AT5G27780' => 'ath', 'Atru.chr12.2434' => 'acertr', 'Atru.chr13.165' => 'acertr', 'Atru.chr2.2535' => 'acertr', 'AUR62009962' => 'cqu', 'AUR62009963' => 'cqu', 'AUR62009964' => 'cqu', 'AUR62009965' => 'cqu', 'AUR62009966' => 'cqu', 'AUR62009967' => 'cqu', 'AUR62009968' => 'cqu', 'AUR62009969' => 'cqu', 'AUR62009970' => 'cqu', 'AUR62009971' => 'cqu', 'AUR62009974' => 'cqu', 'AUR62009975' => 'cqu', 'AUR62009977' => 'cqu', 'AUR62009978' => 'cqu', 'AUR62009979' => 'cqu', 'AUR62009980' => 'cqu', 'AUR62012954' => 'cqu', 'AUR62012955' => 'cqu', 'AUR62012956' => 'cqu', 'AUR62012957' => 'cqu', 'AUR62012958' => 'cqu', 'AUR62012959' => 'cqu', 'AUR62012960' => 'cqu', 'AUR62012961' => 'cqu', 'AUR62012962' => 'cqu', 'AUR62012963' => 'cqu', 'AUR62012964' => 'cqu', 'AUR62012965' => 'cqu', 'AUR62012966' => 'cqu', 'AUR62012967' => 'cqu', 'AUR62012968' => 'cqu', 'AUR62012969' => 'cqu', 'BcaB03g12161' => 'bca', 'BcaB03g12162' => 'bca', 'BcaB03g12163' => 'bca', 'BcaB03g13881' => 'bca', 'BcaB03g14318' => 'bca', 'BcaB06g29138' => 'bca', 'BcaB07g32049' => 'bca', 'BcaB07g32534' => 'bca', 'BcaB07g32535' => 'bca', 'BcaB07g32537' => 'bca', 'BcaB07g32538' => 'bca', 'BcaC01g00110' => 'bca', 'BcaC01g00113' => 'bca', 'BcaC01g00114' => 'bca', 'BcaC01g00115' => 'bca', 'BcaC02g07362' => 'bca', 'BcaC05g25957' => 'bca', 'BcaC05g26966' => 'bca', 'BcaC05g26967' => 'bca', 'BcaC05g26975' => 'bca', 'BcaC06g35435' => 'bca', 'BcaC08g43828' => 'bca', 'BcaC08g47114' => 'bca', 'BcaC08g47282' => 'bca', 'BcaNung03385' => 'bca', 'BNapus_Darmor_BZH_scaffold_170p00040' => 'bna', 'BolC3t19844H' => 'bol', 'BolC3t19845H' => 'bol', 'BolC3t19846H' => 'bol', 'BolC3t19847H' => 'bol', 'BolC5t30607H' => 'bol', 'BolC5t31546H' => 'bol', 'BolC5t31547H' => 'bol', 'BolC5t31553H' => 'bol', 'BolC6t40054H' => 'bol', 'BolC7t42116H' => 'bol', 'BolC7t42839H' => 'bol', 'BraA06t24757Z' => 'bra', 'BraA07t29303Z' => 'bra', 'BraA07t31706Z' => 'bra', 'BraA08t34458Z' => 'bra', 'BraA08t34459Z' => 'bra', 'BraA08t34460Z' => 'bra', 'BraA08t34461Z' => 'bra', 'BraA09t39203Z' => 'bra', 'BraA09t39204Z' => 'bra', 'BraA09t39208Z' => 'bra', 'C03p75920' => 'bna', 'C03p75940' => 'bna', 'C03p75950' => 'bna', 'C03p75960' => 'bna', 'C05p19060' => 'bna', 'C05p28210' => 'bna', 'C05p28310' => 'bna', 'C06p50140' => 'bna', 'C07p22990' => 'bna', 'CAN.G1792.1' => 'can', 'CAN.G222.101' => 'can', 'CAN.G222.104' => 'can', 'CAN.G222.106' => 'can', 'CAN.G222.108' => 'can', 'CAN.G222.109' => 'can', 'CAN.G222.111' => 'can', 'CAN.G222.114' => 'can', 'CAN.G222.115' => 'can', 'CAN.G222.118' => 'can', 'CAN.G222.119' => 'can', 'CAN.G222.122' => 'can', 'CAN.G222.125' => 'can', 'CAN.G222.126' => 'can', 'CAN.G222.127' => 'can', 'CAN.G222.129' => 'can', 'CAN.G222.131' => 'can', 'CAN.G222.133' => 'can', 'CAN.G222.82' => 'can', 'CAN.G222.87' => 'can', 'CAN.G222.89' => 'can', 'CAN.G222.90' => 'can', 'CAN.G222.93' => 'can', 'CAN.G222.99' => 'can', 'CAN.G2494.3' => 'can', 'CAN.G321.53' => 'can', 'CAN.G321.54' => 'can', 'CAN.G506.4' => 'can', 'CAN.G506.6' => 'can', 'CAN.G58.12' => 'can', 'CAN.G58.15' => 'can', 'CAN.G58.17' => 'can', 'CAN.G58.18' => 'can', 'CAN.G58.5' => 'can', 'CAN.G97.27' => 'can', 'CAN.G97.30' => 'can', 'CANSAT25G0818' => 'cansat', 'CANSAT25G0915' => 'cansat', 'CANSAT25G2397' => 'cansat', 'CARHR020920' => 'chi', 'CARHR028760' => 'chi', 'CARHR028770' => 'chi', 'CARHR028800' => 'chi', 'CARHR028810' => 'chi', 'CARHR028820' => 'chi', 'CARHR028830' => 'chi', 'CARHR028850' => 'chi', 'CARHR028860' => 'chi', 'CARHR028880' => 'chi', 'CARHR028890' => 'chi', 'CARHR028900' => 'chi', 'CARHR069750' => 'chi', 'Carub.0001s1994' => 'cru', 'Carub.0001s2763' => 'cru', 'Carub.0001s2765' => 'cru', 'Carub.0001s2766' => 'cru', 'Carub.0001s2767' => 'cru', 'Carub.0001s2768' => 'cru', 'Carub.0001s2771' => 'cru', 'Carub.0001s2772' => 'cru', 'Carub.0001s2773' => 'cru', 'Carub.0001s2774' => 'cru', 'Carub.0002s2309' => 'cru', 'Cc09_g10510' => 'ccan', 'CDE05G0073' => 'cde', 'CDE05G0108' => 'cde', 'CDE05G0410' => 'cde', 'CDE05G1360' => 'cde', 'CDE05G1428' => 'cde', 'CDE05G1518' => 'cde', 'CDE05G1570' => 'cde', 'CDE05G1630' => 'cde', 'CDE05G2313' => 'cde', 'CDE05G2369' => 'cde', 'CDE05G2467' => 'cde', 'CDE05G2583' => 'cde', 'CDE05G2777' => 'cde', 'CDE05G2882' => 'cde', 'CDE05G2970' => 'cde', 'CDE05G3267' => 'cde', 'CDE05G3363' => 'cde', 'CDE05G3427' => 'cde', 'CDE05G3516' => 'cde', 'CDE05G3674' => 'cde', 'Cfa005326' => 'cfa', 'Cfa014045' => 'cfa', 'Cfa014046' => 'cfa', 'Cfa014049' => 'cfa', 'Cfa014680' => 'cfa', 'Ciclev10003575m.g' => 'ccl', 'Ciclev10029526m.g' => 'ccl', 'Ciclev10029533m.g' => 'ccl', 'Ciclev10029899m.g' => 'ccl', 'Ciclev10029968m.g' => 'ccl', 'Ciclev10029997m.g' => 'ccl', 'Ciclev10030020m.g' => 'ccl', 'Ciclev10030136m.g' => 'ccl', 'Ciclev10030330m.g' => 'ccl', 'Ciclev10030346m.g' => 'ccl', 'Ciclev10030357m.g' => 'ccl', 'Ciclev10030409m.g' => 'ccl', 'CiPaw.05G088200' => 'cil', 'CiPaw.05G088300' => 'cil', 'CiPaw.05G088400' => 'cil', 'CiPaw.05G088500' => 'cil', 'CiPaw.06G116900' => 'cil', 'CiPaw.07G140400' => 'cil', 'ClCG02G003650' => 'cla', 'COL.COLO4_17970' => 'col', 'COL.COLO4_17971' => 'col', 'COL.COLO4_17972' => 'col', 'COL.COLO4_17973' => 'col', 'COL.COLO4_17975' => 'col', 'COL.COLO4_17976' => 'col', 'COL.COLO4_17977' => 'col', 'COL.COLO4_17978' => 'col', 'COL.COLO4_17979' => 'col', 'COL.COLO4_17980' => 'col', 'COL.COLO4_17981' => 'col', 'COL.COLO4_17982' => 'col', 'COL.COLO4_17983' => 'col', 'COL.COLO4_17984' => 'col', 'COL.COLO4_17985' => 'col', 'COL.COLO4_17986' => 'col', 'COL.COLO4_21604' => 'col', 'COL.COLO4_26797' => 'col', 'Cpa.g.sc20.140' => 'cpa', 'Cpa.g.sc20.141' => 'cpa', 'Cpa.g.sc20.142' => 'cpa', 'Cpa.g.sc20.143' => 'cpa', 'Cpa.g.sc20.144' => 'cpa', 'Cpa.g.sc20.145' => 'cpa', 'Cpa.g.sc20.146' => 'cpa', 'Cpa.g.sc20.147' => 'cpa', 'Cpa.g.sc20.149' => 'cpa', 'Cpa.g.sc20.150' => 'cpa', 'Cpa.g.sc20.151' => 'cpa', 'Cpa.g.sc20.152' => 'cpa', 'Cpa.g.sc20.153' => 'cpa', 'Cpa.g.sc20.155' => 'cpa', 'Cpa.g.sc20.156' => 'cpa', 'Cpa.g.sc26.221' => 'cpa', 'CsaV3_7G001480' => 'csa', 'CSS0002906' => 'camsi', 'CSS0004746' => 'camsi', 'CSS0009432' => 'camsi', 'CSS0010550' => 'camsi', 'CSS0012756' => 'camsi', 'CSS0015549' => 'camsi', 'CSS0021458' => 'camsi', 'CSS0023406' => 'camsi', 'DCAR_003205' => 'dca', 'Dinv31922' => 'din', 'Duzib052G0570' => 'dzi', 'Duzib052G0779' => 'dzi', 'Duzib052G0864' => 'dzi', 'Duzib052G0904' => 'dzi', 'Duzib093G0706' => 'dzi', 'Duzib114G0449' => 'dzi', 'Duzib132G0422' => 'dzi', 'Duzib248G0003' => 'dzi', 'Duzib248G0287' => 'dzi', 'Duzib248G0834' => 'dzi', 'Duzib248G1285' => 'dzi', 'ECA233G0426' => 'eca', 'ECA233G5803' => 'eca', 'ECA234G3159' => 'eca', 'ECA246G1224' => 'eca', 'EL10Ac9g21290' => 'bvu', 'EL10Ac9g21291' => 'bvu', 'EL10Ac9g21292' => 'bvu', 'EL10Ac9g21293' => 'bvu', 'EL10Ac9g21294' => 'bvu', 'EL10Ac9g21295' => 'bvu', 'EL10Ac9g21296' => 'bvu', 'EL10Ac9g21297' => 'bvu', 'EL10Ac9g21298' => 'bvu', 'EL10Ac9g21300' => 'bvu', 'Eucgr.E04346' => 'egr', 'Eucgr.G01815' => 'egr', 'Eucgr.G01816' => 'egr', 'Eucgr.G01817' => 'egr', 'Eucgr.G01818' => 'egr', 'Eucgr.G01821' => 'egr', 'Eucgr.G01824' => 'egr', 'Eucgr.G01825' => 'egr', 'Eucgr.G01827' => 'egr', 'Eucgr.G01828' => 'egr', 'Eucgr.G01829' => 'egr', 'Eucgr.I01253' => 'egr', 'Eucgr.I01254' => 'egr', 'Eucgr.I01275' => 'egr', 'Eucgr.I01276' => 'egr', 'Eucgr.I01481' => 'egr', 'Eucgr.I01482' => 'egr', 'Eucgr.I01483' => 'egr', 'Eucgr.I01485' => 'egr', 'Eucgr.I01486' => 'egr', 'Eucgr.I01487' => 'egr', 'Eucgr.I01488' => 'egr', 'Eucgr.I01489' => 'egr', 'Eucgr.I01490' => 'egr', 'Eucgr.I01491' => 'egr', 'Eucgr.L01268' => 'egr', 'Eucgr.L01269' => 'egr', 'Eucgr.L01270' => 'egr', 'Eucgr.L03609' => 'egr', 'FAN02G3338' => 'fan', 'FAN05G0432' => 'fan', 'FAN09G0374' => 'fan', 'FAN09G3534' => 'fan', 'FAN09G3906' => 'fan', 'FAN09G4374' => 'fan', 'FAN09G4516' => 'fan', 'FAN14G1407' => 'fan', 'FAN14G3198' => 'fan', 'FvH4_6g27350' => 'fve', 'Glyma.11G096800' => 'gma', 'Glyma.11G096900' => 'gma', 'Glyma.12G022900' => 'gma', 'Glyma.12G023000' => 'gma', 'Gohir.A01G149218' => 'ghi', 'Gohir.A01G156550' => 'ghi', 'Gohir.A01G172450' => 'ghi', 'Gohir.A01G172500' => 'ghi', 'Gohir.A03G206901' => 'ghi', 'Gohir.A03G207000' => 'ghi', 'Gohir.A03G207101' => 'ghi', 'Gohir.A03G207200' => 'ghi', 'Gohir.A03G207300' => 'ghi', 'Gohir.A03G207400' => 'ghi', 'Gohir.A03G207500' => 'ghi', 'Gohir.A03G207600' => 'ghi', 'Gohir.A03G207700' => 'ghi', 'Gohir.A03G207800' => 'ghi', 'Gohir.A03G207901' => 'ghi', 'Gohir.A03G208000' => 'ghi', 'Gohir.A05G180850' => 'ghi', 'Gohir.D01G141448' => 'ghi', 'Gohir.D01G141480' => 'ghi', 'Gohir.D01G163500' => 'ghi', 'Gohir.D01G163550' => 'ghi', 'Gohir.D01G163600' => 'ghi', 'Gohir.D01G163650' => 'ghi', 'Gohir.D02G228400' => 'ghi', 'Gohir.D02G228500' => 'ghi', 'Gohir.D02G228533' => 'ghi', 'Gohir.D02G228566' => 'ghi', 'Gohir.D02G228600' => 'ghi', 'Gohir.D02G228700' => 'ghi', 'Gohir.D02G228800' => 'ghi', 'Gohir.D02G228900' => 'ghi', 'Gohir.D02G229000' => 'ghi', 'Gohir.D02G229100' => 'ghi', 'Gohir.D02G229200' => 'ghi', 'Gohir.D02G229300' => 'ghi', 'Gohir.D02G229350' => 'ghi', 'Gohir.D02G229400' => 'ghi', 'Gohir.D02G229500' => 'ghi', 'Gohir.D04G113800' => 'ghi', 'Gohir.D05G183833' => 'ghi', 'Gorai.002G174300' => 'gra', 'Gorai.002G202800' => 'gra', 'Gorai.002G202900' => 'gra', 'Gorai.002G203000' => 'gra', 'Gorai.002G203100' => 'gra', 'Gorai.005G256400' => 'gra', 'Gorai.005G256500' => 'gra', 'Gorai.005G256600' => 'gra', 'Gorai.005G256700' => 'gra', 'Gorai.005G256800' => 'gra', 'Gorai.005G256900' => 'gra', 'Gorai.005G257000' => 'gra', 'Gorai.005G257100' => 'gra', 'Gorai.005G257200' => 'gra', 'Gorai.009G189200' => 'gra', 'Gorai.N011800' => 'gra', 'Gorai.N011900' => 'gra', 'Gorai.N012000' => 'gra', 'Gorai.N012100' => 'gra', 'Gorai.N012200' => 'gra', 'Gorai.N012300' => 'gra', 'GSVIVG01008695001' => 'vvi', 'GSVIVG01023879001' => 'vvi', 'GSVIVG01023880001' => 'vvi', 'GSVIVG01023881001' => 'vvi', 'GSVIVG01023907001' => 'vvi', 'GSVIVG01023908001' => 'vvi', 'GSVIVG01023909001' => 'vvi', 'GSVIVG01023910001' => 'vvi', 'GSVIVG01023911001' => 'vvi', 'GSVIVG01023912001' => 'vvi', 'GSVIVG01023913001' => 'vvi', 'GSVIVG01023915001' => 'vvi', 'GSVIVG01023916001' => 'vvi', 'GSVIVG01023917001' => 'vvi', 'HanXRQChr10g0298291' => 'han', 'HanXRQChr12g0374731' => 'han', 'HanXRQChr12g0374741' => 'han', 'HanXRQChr12g0374751' => 'han', 'HanXRQChr12g0374761' => 'han', 'HanXRQChr16g0527791' => 'han', 'HanXRQChr17g0543781' => 'han', 'Haze_02021' => 'cav', 'Haze_13281' => 'cav', 'Haze_13284' => 'cav', 'Haze_22746' => 'cav', 'Haze_22747' => 'cav', 'Hma1.2p1_0634F.1_g192820' => 'hma', 'Hma1.2p1_0634F.1_g192830' => 'hma', 'Hma1.2p1_0634F.1_g192840' => 'hma', 'Hma1.2p1_0634F.1_g192850' => 'hma', 'Hma1.2p1_0634F.1_g192860' => 'hma', 'HPP92_003497' => 'vpl', 'HPP92_012954' => 'vpl', 'HPP92_012955' => 'vpl', 'HPP92_012956' => 'vpl', 'HPP92_012957' => 'vpl', 'HPP92_012958' => 'vpl', 'HPP92_014548' => 'vpl', 'HPP92_026894' => 'vpl', 'Lalb_Chr01g0001201' => 'lal', 'Lalb_Chr03g0024581' => 'lal', 'Lalb_Chr19g0131731' => 'lal', 'Lj3g0019991' => 'lja', 'Lj5C173T10' => 'lonja', 'Lj5C173T9' => 'lonja', 'Lj9C403T19' => 'lonja', 'Lj9C403T20' => 'lonja', 'Lsat_1_v5_gn_3_47780' => 'lsa', 'Lsat_1_v5_gn_4_70460' => 'lsa', 'Lsat_1_v5_gn_8_121760' => 'lsa', 'Lsat_1_v5_gn_8_122241' => 'lsa', 'Lsat_1_v5_gn_8_122340' => 'lsa', 'Manes.05G136200' => 'mes', 'Manes.07G038243' => 'mes', 'Manes.07G038304' => 'mes', 'Manes.07G038733' => 'mes', 'Manes.07G039915' => 'mes', 'Manes.07G042632' => 'mes', 'Manes.07G042700' => 'mes', 'Manes.07G110500' => 'mes', 'Manes.07G110600' => 'mes', 'Manes.10G097901' => 'mes', 'Manes.10G098000' => 'mes', 'Manes.10G098200' => 'mes', 'Manes.18G006885' => 'mes', 'Manes.18G006940' => 'mes', 'MBI02_g01545_MAGBIO' => 'mbi', 'MBI02_g45486_MAGBIO' => 'mbi', 'MBI05_g08261_MAGBIO' => 'mbi', 'MBI05_g14866_MAGBIO' => 'mbi', 'MBI05_g14867_MAGBIO' => 'mbi', 'MBI05_g19982_MAGBIO' => 'mbi', 'MBI05_g19996_MAGBIO' => 'mbi', 'MBI05_g20000_MAGBIO' => 'mbi', 'MBI05_g20001_MAGBIO' => 'mbi', 'MBI05_g20002_MAGBIO' => 'mbi', 'MBI08_g03691_MAGBIO' => 'mbi', 'MBI08_g21666_MAGBIO' => 'mbi', 'MBI08_g21667_MAGBIO' => 'mbi', 'MBI08_g23563_MAGBIO' => 'mbi', 'MBI08_g23566_MAGBIO' => 'mbi', 'MBI08_g35875_MAGBIO' => 'mbi', 'MBI08_g35878_MAGBIO' => 'mbi', 'MBI08_g37904_MAGBIO' => 'mbi', 'MBI08_g37906_MAGBIO' => 'mbi', 'MBI08_g37910_MAGBIO' => 'mbi', 'MBI08_g37911_MAGBIO' => 'mbi', 'MBI08_g41457_MAGBIO' => 'mbi', 'MBI08_g41458_MAGBIO' => 'mbi', 'MBI08_g43849_MAGBIO' => 'mbi', 'MD07G1151400' => 'mdo', 'MD12G1088000' => 'mdo', 'MD12G1088100' => 'mdo', 'MD12G1088200' => 'mdo', 'Medtr4g075760' => 'mtr', 'MELO3C013302.2' => 'cme', 'Migut.C00927' => 'egut', 'Migut.N01342' => 'egut', 'Migut.N01343' => 'egut', 'Migut.O00696' => 'egut', 'Migut.O00697' => 'egut', 'Nitab4.5_0001088g0030' => 'nta', 'Nitab4.5_0001088g0080' => 'nta', 'Nitab4.5_0001088g0140' => 'nta', 'Nitab4.5_0001421g0050' => 'nta', 'Nitab4.5_0001421g0070' => 'nta', 'Nitab4.5_0001438g0050' => 'nta', 'Nitab4.5_0001438g0070' => 'nta', 'Nitab4.5_0001438g0080' => 'nta', 'Nitab4.5_0001438g0120' => 'nta', 'Nitab4.5_0001438g0130' => 'nta', 'Nitab4.5_0001650g0120' => 'nta', 'Nitab4.5_0001650g0130' => 'nta', 'Nitab4.5_0002693g0090' => 'nta', 'Nitab4.5_0002693g0100' => 'nta', 'Nitab4.5_0002693g0110' => 'nta', 'Nitab4.5_0003533g0030' => 'nta', 'Nitab4.5_0003533g0040' => 'nta', 'Nitab4.5_0003533g0050' => 'nta', 'Nitab4.5_0003533g0060' => 'nta', 'Nitab4.5_0005124g0060' => 'nta', 'Nitab4.5_0005124g0070' => 'nta', 'Nitab4.5_0005124g0090' => 'nta', 'Nitab4.5_0006562g0070' => 'nta', 'Nitab4.5_0007284g0020' => 'nta', 'Nitab4.5_0007284g0030' => 'nta', 'Nitab4.5_0007284g0040' => 'nta', 'Nitab4.5_0009898g0030' => 'nta', 'Nitab4.5_0009898g0050' => 'nta', 'Nitab4.5_0010400g0010' => 'nta', 'Nitab4.5_0010400g0020' => 'nta', 'Nitab4.5_0011736g0020' => 'nta', 'Nn5g30903' => 'nnu', 'Nn5g30904' => 'nnu', 'Nn5g30905' => 'nnu', 'Nn6g31782' => 'nnu', 'Nn6g31783' => 'nnu', 'Nn6g31784' => 'nnu', 'Nn6g31786' => 'nnu', 'Nn6g31787' => 'nnu', 'Nn6g31788' => 'nnu', 'Nn6g31789' => 'nnu', 'Nn6g31790' => 'nnu', 'Nn6g31791' => 'nnu', 'Nn6g31805' => 'nnu', 'Nn6g31806' => 'nnu', 'Nn6g31807' => 'nnu', 'Nn6g31808' => 'nnu', 'Nn6g31809' => 'nnu', 'Nn6g31810' => 'nnu', 'Nn6g31811' => 'nnu', 'Nn6g31812' => 'nnu', 'Nn6g31813' => 'nnu', 'Nn6g31814' => 'nnu', 'Nn6g31815' => 'nnu', 'Nn6g31816' => 'nnu', 'Nn6g31817' => 'nnu', 'Nn6g31818' => 'nnu', 'Nn6g31819' => 'nnu', 'Nn6g31821' => 'nnu', 'Nn6g31822' => 'nnu', 'Nn6g31824' => 'nnu', 'Nn6g31825' => 'nnu', 'Os07g0475700' => 'osa', 'Os08g0550700' => 'osa', 'Os09g0545300' => 'osa', 'Os09g0545500' => 'osa', 'Os09g0545700' => 'osa', 'Os09g0546100' => 'osa', 'Os09g0546200' => 'osa', 'Os09g0546700' => 'osa', 'Os09g0546900' => 'osa', 'Os09g0547000' => 'osa', 'Os09g0547033' => 'osa', 'Os09g0547100' => 'osa', 'Peaxi162Scf00075g00185' => 'pax', 'Peaxi162Scf00168g01124' => 'pax', 'Peaxi162Scf00334g00062' => 'pax', 'Peaxi162Scf00334g00610' => 'pax', 'Peaxi162Scf00334g10111' => 'pax', 'Peaxi162Scf00464g00323' => 'pax', 'Peaxi162Scf00464g00324' => 'pax', 'Peaxi162Scf01481g00011' => 'pax', 'PGR042G0398' => 'pgr', 'PGR042G1132' => 'pgr', 'PGR042G3081' => 'pgr', 'PGR142G0175' => 'pgr', 'PGR142G0386' => 'pgr', 'PGR142G0537' => 'pgr', 'PGR142G1338' => 'pgr', 'PGR142G1372' => 'pgr', 'PGR142G1503' => 'pgr', 'PGR142G3358' => 'pgr', 'PGR142G3463' => 'pgr', 'PGSC0003DMG400005004' => 'stu', 'PGSC0003DMG400005024' => 'stu', 'PGSC0003DMG400005026' => 'stu', 'PGSC0003DMG400005027' => 'stu', 'PGSC0003DMG400013250' => 'stu', 'PGSC0003DMG400013251' => 'stu', 'PGSC0003DMG400013252' => 'stu', 'PGSC0003DMG400013253' => 'stu', 'PGSC0003DMG400013318' => 'stu', 'PGSC0003DMG400013322' => 'stu', 'PGSC0003DMG400013323' => 'stu', 'PGSC0003DMG400013371' => 'stu', 'PGSC0003DMG400013372' => 'stu', 'PGSC0003DMG400015029' => 'stu', 'PGSC0003DMG400015030' => 'stu', 'PGSC0003DMG400016558' => 'stu', 'PGSC0003DMG400016559' => 'stu', 'PGSC0003DMG400016560' => 'stu', 'PGSC0003DMG400016561' => 'stu', 'PGSC0003DMG400016562' => 'stu', 'PGSC0003DMG400016563' => 'stu', 'PGSC0003DMG400016564' => 'stu', 'PGSC0003DMG400016565' => 'stu', 'PGSC0003DMG400016566' => 'stu', 'PGSC0003DMG400016567' => 'stu', 'PGSC0003DMG400016569' => 'stu', 'PGSC0003DMG400016570' => 'stu', 'PGSC0003DMG400016584' => 'stu', 'PGSC0003DMG400016585' => 'stu', 'PGSC0003DMG400016586' => 'stu', 'PGSC0003DMG400016594' => 'stu', 'PGSC0003DMG400016596' => 'stu', 'PGSC0003DMG400021977' => 'stu', 'PGSC0003DMG400021978' => 'stu', 'PGSC0003DMG400021979' => 'stu', 'PGSC0003DMG400021980' => 'stu', 'PGSC0003DMG400036633' => 'stu', 'PGSC0003DMG400039638' => 'stu', 'PGSC0003DMG400046542' => 'stu', 'PGSC0003DMG401024620' => 'stu', 'PGSC0003DMG404013254' => 'stu', 'Phvul.011G024900' => 'pvu', 'Phvul.011G025000' => 'pvu', 'Potri.002G064150' => 'ptr', 'Potri.002G064300' => 'ptr', 'Potri.004G181400' => 'ptr', 'Potri.004G181500' => 'ptr', 'Potri.005G196850' => 'ptr', 'Potri.009G140900' => 'ptr', 'Potri.009G141000' => 'ptr', 'Potri.009G141100' => 'ptr', 'Potri.009G141150' => 'ptr', 'Potri.009G141201' => 'ptr', 'Potri.009G141251' => 'ptr', 'Potri.017G043400' => 'ptr', 'Potri.017G043500' => 'ptr', 'Potri.017G043600' => 'ptr', 'Prupe.7G048400' => 'ppe', 'Prupe.7G048500' => 'ppe', 'Prupe.7G048600' => 'ppe', 'Psat7g178520' => 'psa', 'PSO541G0512' => 'pso', 'PSO675G6403' => 'pso', 'QL02p013805' => 'qlo', 'QL11p053893' => 'qlo', 'QL11p053902' => 'qlo', 'QL11p053912' => 'qlo', 'RcHm_v2.0_Chr2g0129571' => 'rch', 'RcHm_v2.0_Chr2g0129581' => 'rch', 'RcHm_v2.0_Chr2g0131961' => 'rch', 'RcHm_v2.0_Chr2g0131971' => 'rch', 'RcHm_v2.0_Chr2g0131981' => 'rch', 'Rhsim05G0050100' => 'rsi', 'Rhsim10G0037400' => 'rsi', 'Rhsim11G0195700' => 'rsi', 'Sabra02G0051400' => 'sbr', 'Sabra04G0122000' => 'sbr', 'Sabra04G0122100' => 'sbr', 'Sabra04G0122200' => 'sbr', 'Sabra09G0109700' => 'sbr', 'Sabra17G0029600' => 'sbr', 'Sabra17G0029700' => 'sbr', 'SalBow5G1366' => 'sbo', 'SalBow5G2826' => 'sbo', 'SalBow5G3695' => 'sbo', 'Sed0013158' => 'sed', 'SGA_v2.0_scaffold207G41948' => 'sas', 'Solyc04g052890.3' => 'sly', 'Solyc04g052910.3' => 'sly', 'Solyc04g052960.1' => 'sly', 'Solyc04g052980.1' => 'sly', 'Solyc04g052990.1' => 'sly', 'Solyc04g053010.1' => 'sly', 'Solyc04g053020.2' => 'sly', 'Solyc04g053030.1' => 'sly', 'Solyc04g082230.1' => 'sly', 'Solyc10g052530.1' => 'sly', 'Solyc10g052550.1' => 'sly', 'Solyc10g052560.1' => 'sly', 'Solyc10g052565.1' => 'sly', 'Solyc10g052590.1' => 'sly', 'Solyc11g011630.3' => 'sly', 'Solyc11g011640.1' => 'sly', 'Solyc11g011660.1' => 'sly', 'Solyc11g011670.1' => 'sly', 'Solyc11g011673.1' => 'sly', 'Solyc11g011690.1' => 'sly', 'Solyc11g011710.1' => 'sly', 'Solyc11g011730.1' => 'sly', 'Sopen04g012620' => 'spe', 'Sopen04g023260' => 'spe', 'Sopen04g023270' => 'spe', 'Sopen04g023290' => 'spe', 'Sopen04g023300' => 'spe', 'Sopen04g023310' => 'spe', 'Sopen04g023320' => 'spe', 'Sopen04g023330' => 'spe', 'Sopen10g023290' => 'spe', 'Sopen10g023310' => 'spe', 'Sopen10g023320' => 'spe', 'Sopen10g023330' => 'spe', 'Sopen11g006470' => 'spe', 'Sopen11g006480' => 'spe', 'Sopen11g006490' => 'spe', 'Sopen11g006510' => 'spe', 'Sopen11g006520' => 'spe', 'Sopen11g006530' => 'spe', 'Sopen11g006540' => 'spe', 'Sopen11g006550' => 'spe', 'Sopen11g006560' => 'spe', 'Sp1g18180' => 'spa', 'Sp1g25360' => 'spa', 'Sp1g25370' => 'spa', 'Sp1g25420' => 'spa', 'Sp1g25430' => 'spa', 'Sp1g25440' => 'spa', 'Sp1g25450' => 'spa', 'Sp5g31340' => 'spa', 'TAR625G1368' => 'tar', 'TAR628G1019' => 'tar', 'THA.LOC104809735' => 'tha', 'THA.LOC104820619' => 'tha', 'THA.LOC104820699' => 'tha', 'Thecc.02G050100' => 'tca', 'Thecc.02G050200' => 'tca', 'Thecc.02G050300' => 'tca', 'Thecc.02G050400' => 'tca', 'Thecc.02G050500' => 'tca', 'Thecc.02G050600' => 'tca', 'Thecc.02G050700' => 'tca', 'Thecc.02G050900' => 'tca', 'Thecc.02G051000' => 'tca', 'Thecc.02G051200' => 'tca', 'Thecc.02G051300' => 'tca', 'Thecc.02G051400' => 'tca', 'Thecc.08G055900' => 'tca', 'Thhalv10009028m.g' => 'esa', 'Thhalv10009034m.g' => 'esa', 'Thhalv10009036m.g' => 'esa', 'Thhalv10009049m.g' => 'esa', 'Thhalv10009068m.g' => 'esa', 'Thhalv10009169m.g' => 'esa', 'Thhalv10009397m.g' => 'esa', 'Thhalv10009531m.g' => 'esa', 'Thhalv10009906m.g' => 'esa', 'TPR.G21250' => 'tpr', 'TWI31G0391' => 'twi', 'TWI36G1648' => 'twi', 'TWI56G0454' => 'twi', 'TWI59G0642' => 'twi', 'TWI75G0033' => 'twi', 'TWI75G0776' => 'twi', 'TWI75G1057' => 'twi', 'TWI75G1066' => 'twi', 'TWI75G1853' => 'twi', 'TWI79G0129' => 'twi', 'TWI79G0944' => 'twi', 'TWI79G1630' => 'twi', 'vmacro02308' => 'vma', 'vmacro02309' => 'vma', 'vmacro17272' => 'vma', 'VMungo1127G0500' => 'vmu', 'VMungo1127G1582' => 'vmu', 'Zm00001eb104090' => 'zma', 'Zm00001eb104100' => 'zma', 'Zm00001eb104110' => 'zma', 'Zm00001eb104120' => 'zma', 'Zm00001eb104130' => 'zma', 'Zm00001eb104150' => 'zma', 'Zm00001eb104160' => 'zma', 'Zm00001eb104170' => 'zma', 'Zm00001eb104190' => 'zma', 'Zm00001eb180450' => 'zma', 'Zm00001eb234990' => 'zma', 'Zm00001eb319980' => 'zma', 'Zm00001eb321070' => 'zma', 'Zm00001eb321090' => 'zma', 'Zm00001eb321100' => 'zma', 'Zm00001eb321110' => 'zma', 'Zm00001eb321140' => 'zma' ) $gf_id = 'HOM05D000695' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000695' ) $data_identifier = 'HOM05D000695' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'ach' => (int) 3, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 4, 'ath' => (int) 11, 'acertr' => (int) 3, 'cqu' => (int) 32, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 3, 'chi' => (int) 13, 'cru' => (int) 11, 'ccan' => (int) 1, 'cde' => (int) 20, 'cfa' => (int) 5, 'ccl' => (int) 12, 'cil' => (int) 6, 'cla' => (int) 1, 'col' => (int) 18, 'cpa' => (int) 16, 'csa' => (int) 1, 'camsi' => (int) 8, 'dca' => (int) 1, 'din' => (int) 1, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 10, 'egr' => (int) 29, 'fan' => (int) 9, 'fve' => (int) 1, 'gma' => (int) 4, 'ghi' => (int) 40, 'gra' => (int) 21, 'vvi' => (int) 14, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 1, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 14, 'mbi' => (int) 24, 'mdo' => (int) 4, 'mtr' => (int) 1, 'cme' => (int) 1, 'egut' => (int) 5, 'nta' => (int) 31, 'nnu' => (int) 31, 'osa' => (int) 12, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 41, 'pvu' => (int) 2, 'ptr' => (int) 14, 'ppe' => (int) 3, 'psa' => (int) 1, 'pso' => (int) 2, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 22, 'spe' => (int) 21, 'spa' => (int) 8, 'tar' => (int) 2, 'tha' => (int) 3, 'tca' => (int) 13, 'esa' => (int) 9, 'tpr' => (int) 1, 'twi' => (int) 12, 'vma' => (int) 3, 'vmu' => (int) 2, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb321140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1